PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032055001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 247aa    MW: 27599.3 Da    PI: 9.9662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032055001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.2e-12183228655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L+el P+     +k  + a++L +AveYIk+Lq
  GSVIVT01032055001 183 SIAERVRRTRISERMRKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 228
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.437177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-15180238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.73E-11181232No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14182237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8183228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MQKMAFSVIR LNTSGILESF GFTPTREMGN LRAGNSTNVE ANPSVSRLNN QISFSSGLSS  60
CNGLLPKISE IRNENIGLHS PKDGNNSNSR CYISNFTTDS WSDSPFSGLT RMAADNDLKM  120
FSGLNSLEAQ NVDSRYRSLG LTHHLSLPKN FPQITTIEKF LHFQDSVPCK IRAKRGCATH  180
PRSIAERVRR TRISERMRKL QELFPNMDKQ TNTADMLDLA VEYIKDLQKQ VKTLNDTKVK  240
CTCSSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3848900.0FQ384890.1 Vitis vinifera clone SS0AEB4YB12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003633592.11e-168PREDICTED: transcription factor bHLH130
SwissprotQ66GR32e-55BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A438J2261e-167A0A438J226_VITVI; Transcription factor bHLH130
TrEMBLF6HBA71e-167F6HBA7_VITVI; Uncharacterized protein
STRINGVIT_13s0064g01290.t011e-167(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]