PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01032415001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

LBD

Protein Properties

Length: 202aa MW: 22072 Da PI: 8.3647

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01032415001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.3	5.4e-43	41	139	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++ GSVIVT01032415001 41 PCAACKLLRRKCMPGCIFAPYFPPEEPQKFINVHKIFGASNVSKLLNEILPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVLRLQK 132 7***************************************************************************************** PP DUF260 93 elallke 99 el+++++ GSVIVT01032415001 133 ELDATNA 139 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.295	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-42	41	138	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MELIVLPTLD YFYSSTNLER DHTRGKRKVL KMASSSYSNS PCAACKLLRR KCMPGCIFAP 60 YFPPEEPQKF INVHKIFGAS NVSKLLNEIL PHQREDAVNS LAYEAEARMK DPVYGCVGAI 120 SVLQRQVLRL QKELDATNAD LIRFTCNDMS SSLSGPGSSQ FGRRMSHGGG GGGASFNQNS 180 GLPPPYPSPW DNNPSGDSHE S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-65	38	149	8	119	LOB family transfactor Ramosa2.1
5ly0_B	4e-65	38	149	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269\|PubMed:12068116}.

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM455006	0.0	AM455006.1 Vitis vinifera contig VV78X258680.8, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273053.1	1e-125	PREDICTED: LOB domain-containing protein 25
Refseq	XP_010660868.1	1e-125	PREDICTED: LOB domain-containing protein 25
Swissprot	Q9FML4	1e-66	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A438JI69	1e-125	A0A438JI69_VITVI; Protein lateral organ boundaries
STRING	VIT_14s0066g00680.t01	1e-124	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-69	LBD family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01032415001

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]