PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032452001
Common NameVIT_14s0066g01090, VITISV_018445
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 190aa    MW: 21569.1 Da    PI: 7.145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032452001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.5e-181562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  GSVIVT01032452001 15 KGPWTLEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 62
                       79********************************************97 PP
2Myb_DNA-binding54.33.1e-1768111146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  GSVIVT01032452001  68 RGNITDEEQQLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 111
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-23765IPR009057Homeodomain-like
PROSITE profilePS5129416.2721062IPR017930Myb domain
SuperFamilySSF466895.24E-3013109IPR009057Homeodomain-like
SMARTSM007177.0E-141464IPR001005SANT/Myb domain
PfamPF002497.1E-171562IPR001005SANT/Myb domain
CDDcd001673.62E-111762No hitNo description
PROSITE profilePS5129425.64263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-2566117IPR009057Homeodomain-like
SMARTSM007173.5E-1567115IPR001005SANT/Myb domain
PfamPF002496.0E-1668111IPR001005SANT/Myb domain
CDDcd001672.78E-1272111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDKKPCNSQD AEVRKGPWTL EEDLILINYI ANHGEGVWNS LAKSAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITDEEQQLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNFWR TRIQKHIKNA  120
ETFTAQSSDQ THDQATTSQV MGAAHVADSY SPPSYPANLE AFPGPSSAES NDNFWTMEDI  180
WSMQLLNGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261011722128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.90271e-173flower| fruit| inflorescence| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1814260.0EU181426.1 Vitis vinifera R2R3 Myb24 transcription factor (MYB24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268062.11e-140R2R3 Myb24 transcription factor
SwissprotP813911e-97MYB05_ANTMA; Myb-related protein 305
TrEMBLA5BNW71e-140A5BNW7_VITVI; Uncharacterized protein
STRINGVIT_14s0066g01090.t011e-141(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.15e-85myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]