PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032683001
Common NameLOC100250056, VIT_13s0067g02900
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 199aa    MW: 22093.1 Da    PI: 9.7633
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032683001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83e-103285558
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
                       kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l   +     
  GSVIVT01032683001 32 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQRDTTG 85
                       9****************************************9998877666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-162892IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.5653093IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-103283No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-103286No hitNo description
PfamPF001707.4E-93281IPR004827Basic-leucine zipper domain
CDDcd147031.97E-203382No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSRGESLFVD TIEAKKAMAP DKLAELWTLD PKRAKRILAN RQSAARSKER KARYILELER  60
KVQTLQTEAT TLSAQLTLFQ RDTTGLTTEN TELKLRLQAM EQQAQLRDAL NEALKKEVER  120
LKIATGEIMT SSDAYNLGMH HVPYTQSSFF SHQSQPGPNM LQQDPLGRLQ GLDISSRGPS  180
LVKSEGPSIS ASESSSTF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3914790.0FQ391479.1 Vitis vinifera clone SS0AP1YK19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280180.11e-132PREDICTED: transcription factor RF2b isoform X1
SwissprotQ6S4P45e-79RF2B_ORYSJ; Transcription factor RF2b
TrEMBLF6HC811e-131F6HC81_VITVI; Uncharacterized protein
STRINGVIT_13s0067g02900.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.17e-78bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]