PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032779001
Common NameLOC100243201, VIT_13s0067g01450
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LBD
Protein Properties Length: 172aa    MW: 18961.7 Da    PI: 8.3781
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032779001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.92.6e-41111101100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l++
  GSVIVT01032779001  11 SCAACKFLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQH 102
                        6******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la ++++
  GSVIVT01032779001 103 DLAIARAR 110
                        **999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.70910111IPR004883Lateral organ boundaries, LOB
PfamPF031959.3E-4111108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKGHEPRSSS SCAACKFLKR RCTPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILVEVP  60
EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHDLAIARAR LARYTMPASS  120
TSSIFHGSLA MAGFQDFPGC SGIFDGFSHL NSMELNQPVA INDFSQPPFQ L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4761146114LOB family transfactor Ramosa2.1
5ly0_B2e-4761146114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.153740.0flower| fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4291210.0AM429121.2 Vitis vinifera contig VV78X041468.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272821.11e-126PREDICTED: LOB domain-containing protein 21
SwissprotQ9SRL84e-69LBD21_ARATH; LOB domain-containing protein 21
TrEMBLD7T4L71e-124D7T4L7_VITVI; Uncharacterized protein
STRINGVIT_13s0067g01450.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-71LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]