PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032983001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 197aa    MW: 22576.7 Da    PI: 11.0233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032983001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-2058107255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++aa+++++g
  GSVIVT01032983001  58 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAAAYDAAALNFKG 107
                        7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-3257116IPR001471AP2/ERF domain
PROSITE profilePS5103224.97458115IPR001471AP2/ERF domain
CDDcd000182.54E-1958116No hitNo description
SuperFamilySSF541713.92E-2258116IPR016177DNA-binding domain
SMARTSM003806.6E-3758121IPR001471AP2/ERF domain
PfamPF008477.9E-1458107IPR001471AP2/ERF domain
PRINTSPR003679.3E-125970IPR001471AP2/ERF domain
PRINTSPR003679.3E-128197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MISAFADHQD IGSWDNRLAH GYHGQGSLLA ASVSSMRQHG LSQPPQDRGR EGSARKRHYR  60
GVRQRPWGKW AAEIRDPKKA ARVWLGTFDT AEAAAAAYDA AALNFKGTKA KLNFPERSSH  120
IVKETFPAFH VVLIWIQEFM SLLSFRDMTF KASPCRKSKY QSFSFHFRSL TWRWLNFIVM  180
LQTQQVLTNR FAEQTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2454117165ATERF1
3gcc_A3e-2454117165ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4555231e-131AM455523.2 Vitis vinifera contig VV78X051777.28, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275870.22e-81PREDICTED: ethylene-responsive transcription factor ERF113
TrEMBLA0A438JDF51e-79A0A438JDF5_VITVI; Ethylene-responsive transcription factor ERF113
TrEMBLF6H4261e-79F6H426_VITVI; Uncharacterized protein
STRINGVIT_14s0068g01040.t012e-80(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.15e-30related to AP2 6l