PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033032001
Common NameLOC100256653, VIT_14s0068g01490, VITISV_038623
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 163aa    MW: 18617.7 Da    PI: 10.5263
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033032001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.52.6e-4041251128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lp GfrFhPtdeelvv+yLk+k+ + +l++ +vi+e+d++ ++PwdLp  v   +++ yfFs+ +     g++ +r+t  gyWka gkd ++
  GSVIVT01033032001   4 LPIGFRFHPTDEELVVHYLKRKALSFPLPA-SVIPEFDVFLTNPWDLPGDV---KERRYFFSSGKG---FGNKCRRVTGCGYWKAIGKDIQI 88 
                        699***************************.99***************554...346799999766...478999***************** PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ ++++vg+k+tLvfy+g+   g++t+Wvmheyrl
  GSVIVT01033032001  89 VASgSSRAVGMKRTLVFYEGKLGAGTRTQWVMHEYRL 125
                        *9867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-472153IPR003441NAC domain
PROSITE profilePS5100546.7294153IPR003441NAC domain
PfamPF023652.7E-255125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVKLPIGFRF HPTDEELVVH YLKRKALSFP LPASVIPEFD VFLTNPWDLP GDVKERRYFF  60
SSGKGFGNKC RRVTGCGYWK AIGKDIQIVA SGSSRAVGMK RTLVFYEGKL GAGTRTQWVM  120
HEYRLVGLGT APSSTQKCVE EMEDWVVYRM FQKRRRPKRH GL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-36215413169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151158QKRRRPKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.2970.0bud| flower| fruit| inflorescence| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3890070.0FQ389007.1 Vitis vinifera clone SS0AEB21YC17.
GenBankFQ3958100.0FQ395810.1 Vitis vinifera clone SS0AFA13YO23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273649.11e-119PREDICTED: NAC domain-containing protein 83
SwissprotQ9FY931e-52NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A438JD271e-117A0A438JD27_VITVI; NAC domain-containing protein 83
TrEMBLA5AMY11e-117A5AMY1_VITVI; Uncharacterized protein
STRINGVIT_14s0068g01490.t011e-118(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1179656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-55NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]