PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01033063001

Common Name

LOC100263502, VIT_14s0068g01770

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

WRKY

Protein Properties

Length: 183aa MW: 20787.3 Da PI: 9.7723

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01033063001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107	9.1e-34	104	162	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+++v++tYeg H+h+ GSVIVT01033063001 104 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDESIVVTTYEGVHTHP 162 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.2E-35	89	162	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-30	96	163	IPR003657	WRKY domain
PROSITE profile	PS50811	30.125	99	164	IPR003657	WRKY domain
SMART	SM00774	1.3E-40	104	163	IPR003657	WRKY domain
Pfam	PF03106	1.0E-27	105	162	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MENYQNFFAC SSSAPPPASM GFTSNMESSN VFGNVHGHSI PNGFLGLKST EIHVPTGQEV 60 ENISRSSGGF GRSENEVKSC KKKYEKKIRK PRYAFQTRSQ VDILDDGYRW RKYGQKAVKN 120 NKFPRSYYRC THQGCNVKKQ VQRLSKDESI VVTTYEGVHT HPIEKPTDNF EHILNQMQIY 180 AP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	94	163	7	76	Probable WRKY transcription factor 4
2lex_A	1e-27	94	163	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ728450	0.0	JQ728450.1 Vitis amurensis WRKY45 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274387.1	1e-136	PREDICTED: probable WRKY transcription factor 75
TrEMBL	D7SVN0	1e-135	D7SVN0_VITVI; Uncharacterized protein
TrEMBL	I3RQB5	1e-135	I3RQB5_9ROSI; WRKY45
STRING	VIT_14s0068g01770.t01	1e-135	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	3e-57	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	GSVIVT01033063001
Entrez Gene	100263502