PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01033083001

Common Name

LOC100249687, VIT_14s0068g01930, VITISV_010523

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

C2H2

Protein Properties

Length: 254aa MW: 28773.5 Da PI: 9.0063

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01033083001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	94	116	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H GSVIVT01033083001 94 SCSVCSRVYPTSRLLSIHVSEaH 116 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.6	66	91	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	68	91	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.4	93	116	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	95	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.15	131	156	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	133	156	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEVVMEESQL GFPYWSSVRR RFGPESPFFT SGNIERELLA KQVALDLTED EKQHLQNLED 60 EEGRGLFCPI VGCGARLTSL EGFEDHYNAR HTASCSVCSR VYPTSRLLSI HVSEAHDSFF 120 QAKVARGYAM YECLVEGCGM KLKSYKSRQQ HLVDKHKFPT SFEFFKKGQP SKKRRQKLQR 180 KQAVHKREEA SSTMEIEEET ISGLVSAVSK LSTSDSTPSS VSFGRHHTRG FTFVPRAVQN 240 EKRPDSTQAI TKR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	176	KKRRQK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.19252	0.0	flower

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM454881	0.0	AM454881.2 Vitis vinifera contig VV78X003317.3, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002270554.1	0.0	PREDICTED: zinc finger protein 511
TrEMBL	A5BCW3	0.0	A5BCW3_VITVI; Uncharacterized protein
STRING	VIT_14s0068g01930.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP7538	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-102	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	GSVIVT01033083001
Entrez Gene	100249687