PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01033194001

Common Name

VIT_04s0069g00970

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

WRKY

Protein Properties

Length: 157aa MW: 17467.3 Da PI: 6.3464

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01033194001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.3	4.3e-30	67	125	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YYrC+s +C+vkk++er+ ed ++v++tY+g Hnh+ GSVIVT01033194001 67 MDDGFKWRKYGKKMVKSSPNPRNYYRCSSGDCQVKKRIERDIEDSSYVITTYTGIHNHP 125 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.8E-31	56	127	IPR003657	WRKY domain
SuperFamily	SSF118290	8.76E-28	59	127	IPR003657	WRKY domain
PROSITE profile	PS50811	29.861	62	127	IPR003657	WRKY domain
SMART	SM00774	4.1E-32	67	126	IPR003657	WRKY domain
Pfam	PF03106	1.0E-22	68	125	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MLEDGSEEDS CSQTTAAASA VTVTGTGHID QLIHTATPTH DGVRRSKESD DGARVVAFRT 60 KSELDVMDDG FKWRKYGKKM VKSSPNPRNY YRCSSGDCQV KKRIERDIED SSYVITTYTG 120 IHNHPIPGVG YYNQMPLMVP YDYDWTLQAS SQSPFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-23	57	127	7	77	Probable WRKY transcription factor 4
2lex_A	3e-23	57	127	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM462490	1e-107	AM462490.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X161195.8, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002263836.1	1e-114	PREDICTED: probable WRKY transcription factor 51 isoform X1
Swissprot	Q93WU9	7e-39	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	D7T0E7	1e-114	D7T0E7_VITVI; Uncharacterized protein
STRING	VIT_04s0069g00970.t01	1e-114	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-39	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	GSVIVT01033194001

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]