PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033230001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 164aa    MW: 18875 Da    PI: 8.6411
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033230001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052134152220
                        EETTTTEEESSHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                        +C+ Cg+ F ++  L++H+
  GSVIVT01033230001 134 TCETCGEDFESRNKLHQHL 152
                        6*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.141133162IPR007087Zinc finger, C2H2
PROSITE patternPS000280135157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MLHFWFIIEE YWVQKVPDYM QRSMKLNLPP FINDFEDFFV FLFNSIKTSN NCLLSSIHGL  60
IDVFHRSIFV TIMMVERYLG LLVWADKGWK RPVVVYLGMP LLFSDSRGVG PLNLGQSQVC  120
TKSKVAQRKA LGNTCETCGE DFESRNKLHQ HLGDTGHAML RAR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.170733e-60leaf
Vvi.184413e-60fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4882351e-119AM488235.2 Vitis vinifera contig VV78X017458.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLF6HKR92e-60F6HKR9_VITVI; Uncharacterized protein
STRINGVIT_08s0007g09030.t013e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1637222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.13e-11DNAJ heat shock N-terminal domain-containing protein