PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033253001
Common NameVIT_08s0007g08790
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 182aa    MW: 20696 Da    PI: 9.6711
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033253001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.4e-29959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien   rqvtfskRr+g+lKKA+ELSvLCdaev viifsstgklye+ss
  GSVIVT01033253001  9 KKIENINSRQVTFSKRRAGLLKKAKELSVLCDAEVGVIIFSSTGKLYEFSS 59
                       68***********************************************96 PP
2K-box71.23.1e-24951791498
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        ++++q e+a Lk+e+ +Lq+   +++G++L+ Ls+keLq+Le+ L +++ ++++kK+++lleq++++++ e+++  en++Lrk++
  GSVIVT01033253001  95 EQESQPEVASLKEEVAKLQKGYLRMMGKELDGLSFKELQHLEHLLSEGILSVKDKKEQVLLEQLKKSRMHEQRAMMENETLRKQV 179
                        58899******************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.59161IPR002100Transcription factor, MADS-box
CDDcd002653.20E-42269No hitNo description
SuperFamilySSF554553.27E-32278IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.0995181IPR002487Transcription factor, K-box
PfamPF014861.2E-1696179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRGKIEIKK IENINSRQVT FSKRRAGLLK KAKELSVLCD AEVGVIIFSS TGKLYEFSSS  60
SMEHTLTRYG RGLDSELPSL HRSAEFTIPV VFTFEQESQP EVASLKEEVA KLQKGYLRMM  120
GKELDGLSFK ELQHLEHLLS EGILSVKDKK EQVLLEQLKK SRMHEQRAMM ENETLRKQVN  180
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21169169MEF2C
5f28_B1e-21169169MEF2C
5f28_C1e-21169169MEF2C
5f28_D1e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4314851e-96AM431485.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X232794.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278584.11e-114PREDICTED: MADS-box transcription factor 23 isoform X1
SwissprotQ392951e-61AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLD7THU31e-127D7THU3_VITVI; Uncharacterized protein
STRINGVIT_08s0007g08790.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.14e-46AGAMOUS-like 15