PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033273001
Common NameVIT_08s0007g08580
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 431aa    MW: 47484.9 Da    PI: 8.6357
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033273001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.58.2e-1469129155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  ++n+   k+  + + l  ++ +e Aa+a++ a++k++g
  GSVIVT01033273001  69 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgkQGIFLCAYDDEEAAARAYDLAALKYWG 129
                        57*******************766644457445899***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-1369138IPR016177DNA-binding domain
PfamPF008471.7E-1069129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1270138IPR001471AP2/ERF domain
PROSITE profilePS5103217.63570137IPR001471AP2/ERF domain
SMARTSM003801.5E-1970143IPR001471AP2/ERF domain
PRINTSPR003674.3E-57182IPR001471AP2/ERF domain
PRINTSPR003674.3E-5119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MASSSSEPGL KPESGGGSGS GGGETSEAAV ASDQLLLYRG LKKAKKERGS TAKERISKMP  60
PCAAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQGIFLCAY DDEEAAARAY  120
DLAALKYWGP GTLINFPVTD YARDLEEMQN VSREEYLASL RRKSSGFSRG ISKYRGLASN  180
RWDQPFGRIA GQEYFNNMHY GMGDDAAAES ELFGGFCMER KIDLTGYIKW WGPNKTRQSD  240
SLAKSSEETK QGSGEDIGSE LKTLEWAIQP TEPYQMPRLG LPHEGKKQKS STVSALSILS  300
RSAAYKSLEE KASKKQENNT ENDENENKNK INKMDHGKAV EKSTSHDSGS ERLGVALGLG  360
GEFSIQRSVY PLTPLLSAPL LTNYSSVDPL ADPILWTSLV PALPTGLPRT AEVTKTETSS  420
TYTFFHQEEQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.61700.0bud| fruit
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4278200.0AM427820.2 Vitis vinifera contig VV78X055578.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284093.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-171AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLF6HKW70.0F6HKW7_VITVI; Uncharacterized protein
STRINGVIT_08s0007g08580.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP91071013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-149AP2 family protein