PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01033300001

Common Name

LOC100255506, VIT_08s0007g08360

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

C2H2

Protein Properties

Length: 243aa MW: 27036.8 Da PI: 8.1137

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01033300001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	214	236	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ +L+ H + H GSVIVT01033300001 214 VCPKCSRGFRDPVSLVEHVERdH 236 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	1.44E-12	6	50	No hit	No description
PROSITE profile	PS51039	7.572	10	56	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	2.0E-10	11	53	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	1.5E-12	13	51	IPR000058	Zinc finger, AN1-type
SMART	SM00154	3.1E-5	13	52	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	4.4E-11	90	155	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	3.66E-9	93	146	No hit	No description
PROSITE profile	PS51039	7.959	98	145	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	1.6E-7	101	141	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.13	101	142	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS50157	8.85	213	241	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	215	236	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MGTPEFPDLG KHCTVDDCKQ IDFLPFTCDR CHQIFCLEHR SYIKHHCPTA DRKDVTVVIC 60 PLCAKGVRLI PDEDPNVTWE THVNTECDPS NYEKATKKKK CPVSGCREIL TFSNTLKCRD 120 CTIDHCLKHR FGPDHKCPGP KKPEAAFPFI GLLNRSKKED SKPSRAPTSS SKWATSFLNV 180 ASNVRASAEA GMTKLTSEFS QAWQTTRDGV TIDVCPKCSR GFRDPVSLVE HVERDHGGTS 240 KA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.29088	0.0	inflorescence\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM460819	0.0	AM460819.2 Vitis vinifera contig VV78X099670.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002283838.1	1e-169	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q0D5B9	1e-115	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A438JKU9	1e-168	A0A438JKU9_VITVI; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	F6HL00	1e-168	F6HL00_VITVI; Uncharacterized protein
STRING	VIT_08s0007g08360.t01	1e-169	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1909	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57480.1	1e-117	C2H2 family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01033300001
Entrez Gene	100255506

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]