PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01033350001

Common Name

LOC100241856, VIT_08s0007g07870

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bHLH

Protein Properties

Length: 365aa MW: 40277.8 Da PI: 5.6402

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01033350001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.5	2.3e-08	207	254	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + + +++sLq GSVIVT01033350001 207 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIISHVQSLQ 254 8*************************9....788889999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.63E-15	201	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.66E-8	201	258	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-14	203	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.462	203	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.4E-6	207	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-8	209	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MERIAGTGGR SGSTGGEKEE IGAESFLFGE EIQRLMTGPP ENGSSFTALL GLPANQAMEL 60 LHSQESDTAP AELSGEAWRD NHMNPHKLYY CSPTFPANTT LIDRAARFSV FAAGENSPET 120 SSVPSNSSHK VKNEPTDTDS NPNSLPPLIS NPTVENKNQR STKRKEREKK AKGSTKKCKN 180 ASNETSEEAE KLPYVHVRAR RGQATDSHSL AERARREKIN ARMKLLQELV PGCNKISGTA 240 LVLDEIISHV QSLQRQVEFL SMRLAAVNPR IDFNLDSLLA PESGSLVDSN FPSMVMPLMW 300 PDVQANENRQ PYQQLWNDDT LHQPVWGREE DDPHNFIAPE HSLLSYDSSA NSGSLQSNQL 360 KMEL*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MERIAGTGGR SGSTGGEKEE IGAESFLFGE EIQRLMTGPP ENGSSFTALL GLPANQAMEL  60
LHSQESDTAP AELSGEAWRD NHMNPHKLYY CSPTFPANTT LIDRAARFSV FAAGENSPET  120
SSVPSNSSHK VKNEPTDTDS NPNSLPPLIS NPTVENKNQR STKRKEREKK AKGSTKKCKN  180
ASNETSEEAE KLPYVHVRAR RGQATDSHSL AERARREKIN ARMKLLQELV PGCNKISGTA  240
LVLDEIISHV QSLQRQVEFL SMRLAAVNPR IDFNLDSLLA PESGSLVDSN FPSMVMPLMW  300
PDVQANENRQ PYQQLWNDDT LHQPVWGREE DDPHNFIAPE HSLLSYDSSA NSGSLQSNQL  360
KMEL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.14239	0.0	flower\| inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM442225	0.0	AM442225.2 Vitis vinifera contig VV78X222794.32, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002282897.1	0.0	PREDICTED: transcription factor bHLH48
Swissprot	Q3EAI1	1e-98	BH060_ARATH; Transcription factor bHLH60
TrEMBL	D7TI19	0.0	D7TI19_VITVI; Uncharacterized protein
STRING	VIT_08s0007g07870.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	6e-98	bHLH family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01033350001
Entrez Gene	100241856

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]