PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033356001
Common NameVIT_08s0007g07810, VITISV_008845
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 281aa    MW: 30748.4 Da    PI: 9.7375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033356001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-13208253655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  GSVIVT01033356001 208 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 253
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16205266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.24E-13206255No hitNo description
Gene3DG3DSA:4.10.280.108.5E-15207263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-10208253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSCQSQLPPQ YPRQSSSTSS SAMDGSYGVV NSNNMEAKQG SSLVRQSSSP AGLFSHLSGQ  60
NGYAIMRGVG NFRPGNVGNG EISPSTSRLK PQVSFSSGLP SSLGLLPQIS EIGSDPGFPY  120
GSWNDSAHFE NFSGMKRDQD NDGKLYSGSN TSGIRNEEFG HRSQILSHHL SLPKTSAEMA  180
AMEKFLQFQD SVPCKIRAKR GCATHPRSIA ERVRRTRISE RMRKLQELVP NMDKQTNTAD  240
MLDLAVEYIK DLQKQYNTLT DNRAHCKCLG KQKPVPNQTV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.129650.0flower| fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4386083e-98AM438608.2 Vitis vinifera contig VV78X052328.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277274.10.0PREDICTED: transcription factor bHLH130
SwissprotQ66GR31e-96BH130_ARATH; Transcription factor bHLH130
TrEMBLA5AWW80.0A5AWW8_VITVI; Uncharacterized protein
STRINGVIT_08s0007g07810.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-95bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]