PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01033418001

Common Name

VIT_08s0007g07230

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 229aa MW: 25569 Da PI: 10.0849

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01033418001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	9e-19	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell+++vk+ G g+W+t +++ g+ R++k+c++rw +yl GSVIVT01033418001 22 RGPWTPEEDELLANYVKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 69 89****************************99**********97 PP
2	Myb_DNA-binding	47.7	3.6e-15	80	120	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSVIVT01033418001 80 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 120 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-23	13	71	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.713	17	69	IPR017930	Myb domain
SuperFamily	SSF46689	2.03E-29	19	116	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-13	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-16	22	69	IPR001005	SANT/Myb domain
CDD	cd00167	1.18E-11	24	69	No hit	No description
PROSITE profile	PS51294	24.397	70	124	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-24	72	125	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-13	74	122	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-14	80	120	IPR001005	SANT/Myb domain
CDD	cd00167	8.44E-12	80	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MRNPASASTS KTPCCTKVGL KRGPWTPEED ELLANYVKRE GEGRWRTLPK RAGLLRCGKS 60 CRLRWMNYLR PSVKRGQIAP DEEDLILRLH RLLGNRWSLI AGRIPGRTDN EIKNYWNTHL 120 SKKLISQGID PRTHKPLNPK PNPSPDEPPN LDQYHSPLAA DSNENWQSAD GLQLQQLQQP 180 SNVIAPLPHP AISVQATFSS SPRTVWEPAA LTSTSAPLVH DQKDSMSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-26	20	124	5	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.17639	1e-157	flower\| inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Siliques. {ECO:0000269\|PubMed:9839469}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY555190	0.0	AY555190.1 Vitis vinifera Myb transcription factor (MybCs1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001268108.1	1e-141	Myb transcription factor
Swissprot	Q38850	3e-81	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	F6HLE7	1e-141	F6HLE7_VITVI; Uncharacterized protein
STRING	VIT_08s0007g07230.t01	1e-142	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	3e-80	myb domain protein 5

Link Out ? help Back to Top
Phytozome	GSVIVT01033418001

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]