PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033508001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 240aa    MW: 24862.3 Da    PI: 10.0779
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033508001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.3e-073659225
                       -S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                       k ++C  f+ t  C++G++C+F H
  GSVIVT01033508001 36 KSKPCTKFFSTSGCPFGESCHFLH 59
                       7789******************** PP
2zf-CCCH35.61.6e-11206230126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ykt+lC++f + G C +G+rC+FaHg
  GSVIVT01033508001 206 YKTKLCDNFTK-GSCTFGERCHFAHG 230
                        9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.33461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-83659IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-53659IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.99E-16106182IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.8E-17110179IPR004088K Homology domain, type 1
SMARTSM003221.8E-13110180IPR004087K Homology domain
PROSITE profilePS5008415.074111175IPR004088K Homology domain, type 1
PfamPF000138.0E-13113177IPR004088K Homology domain, type 1
CDDcd001054.98E-16113175No hitNo description
Gene3DG3DSA:4.10.1000.104.4E-17200236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-9204235IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7205231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145205232IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9206230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDTRKRGRPG GALNANGGFK KSKQEVESLS TGIGSKSKPC TKFFSTSGCP FGESCHFLHY  60
VPGGYNAVAQ MTNQAPILPP ASRNMAGPPP PVPNGSSMPA VKSPAASFGA SATAKISVDA  120
SLAGAIIGKG GVNSKQICRQ TGAKLSIREH DSDPNLRNIE LEGTFEQIKE ASAMVRELIV  180
NISAMPGHAR TTAMPGGGQA PPASNYKTKL CDNFTKGSCT FGERCHFAHG AGELRKSAI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.158710.0flower| fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4882260.0AM488226.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X207637.2, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279071.11e-151PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ9FG301e-102C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLF6HLJ61e-149F6HLJ6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g06400.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-103C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]