PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033528001
Common NameVIT_08s0007g06180
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 185aa    MW: 20484.3 Da    PI: 8.6301
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033528001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31112166155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr+rWtp+LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvk HLQkYR+
  GSVIVT01033528001 112 KPRIRWTPDLHEHFVECVNRLGGAEKATPKAILKLMDSEGLTIFHVKRHLQKYRI 166
                        79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.02E-16110168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-28111168IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-22112167IPR006447Myb domain, plants
PfamPF002494.2E-8116165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MRQKGHISTC SYTPHDFPQK VNIWIVSIAG KSEKGASSSD VPHLDNEDGM QIREALQLQL  60
DLQRRLHEQY SEVYGYLCKS SPLAQQAQCA TSSSEGVSIA SADPVSPVLH SKPRIRWTPD  120
LHEHFVECVN RLGGAEKATP KAILKLMDSE GLTIFHVKRH LQKYRIAKHK PGFAGGKPLF  180
DVDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-24112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-24112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-24112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-24112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-24112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-24112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-24112170260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-24112170260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4246521e-104AM424652.2 Vitis vinifera contig VV78X014098.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019077094.11e-104PREDICTED: protein PHOSPHATE STARVATION RESPONSE 2
TrEMBLD7TIG71e-135D7TIG7_VITVI; Uncharacterized protein
STRINGVIT_08s0007g06180.t011e-136(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.21e-32G2-like family protein