PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033531001
Common NameLOC100262335, VIT_08s0007g06160
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 432aa    MW: 47692.2 Da    PI: 7.3455
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033531001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.2e-11137176544
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                        k  rr+++NReAAr+sR+RKka++++Le    +L++  ++
  GSVIVT01033531001 137 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQE 176
                        7789************************876666665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-8130179No hitNo description
SMARTSM003383.3E-7133215IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289135179IPR004827Basic-leucine zipper domain
PfamPF001703.3E-8137177IPR004827Basic-leucine zipper domain
CDDcd147087.07E-22137185No hitNo description
SuperFamilySSF579593.38E-7137179No hitNo description
PROSITE patternPS000360140155IPR004827Basic-leucine zipper domain
PfamPF141442.9E-31231304IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MQSSSSSAMP GNFLSKDPGA YDLGELDQAL FLYLDGHDPS AIQEQRHNSD IRPPTLNIFP  60
SQPMHVEPPI KASLGLVSPS TSGSKRPSEP SMELANPKND ANVSGPDQPA KAVKREGNRK  120
GPTSSSEQEG PKTPDPKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL TQLEQELQRA  180
RAQGLIFTGG GLLGGGGGDQ NAPVAVTNLS SDAAVFDMEY GRWLEEHHRL MCELRAAVQE  240
HLPENDLRLF VDNCIAHFDG MMNLKSMVAK SDVFHLVSGM WKTPAERCFM WMGGFRPSEV  300
IKIILNQIEP LTEQQILGIC GLQQSTQEAE EALSQGLEAL NQSLSDTIAS DSLSAPPNMA  360
NYMGQMAIAM NKLSTLEGFV RQADNLRHQT IHRLQQVLTT RQAARCLLAM AEYFHRLRAL  420
SSLWMARPRQ E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.236390.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4746531e-145AM474653.2 Vitis vinifera contig VV78X195508.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275147.10.0PREDICTED: transcription factor TGA2.2
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLF6HLL20.0F6HLL2_VITVI; Uncharacterized protein
STRINGVIT_08s0007g06160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP75161218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein