PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033670001
Common NameVIT_08s0007g04830
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 124aa    MW: 14667.7 Da    PI: 10.4579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033670001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-17855148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W +eEde+l   v +lG ++W++Iar  g++R++k+c++rw++yl
  GSVIVT01033670001  8 KGSWLEEEDERLTAFVGLLGERRWDSIARASGLKRSGKSCRLRWLNYL 55
                       799********************************************7 PP
2Myb_DNA-binding49.59.5e-1665106548
                        -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        ++eE++++++++k++G++ W+ Iar ++ gRt++++k++w+++l
  GSVIVT01033670001  65 SAEEEQIILQLHKRWGNK-WSWIARSLP-GRTDNEIKNYWRTHL 106
                        89****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.949359IPR017930Myb domain
SuperFamilySSF466892.49E-275102IPR009057Homeodomain-like
SMARTSM007171.3E-13757IPR001005SANT/Myb domain
PfamPF002491.6E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-20962IPR009057Homeodomain-like
CDDcd001672.68E-81055No hitNo description
SMARTSM007172.1E-1260108IPR001005SANT/Myb domain
PROSITE profilePS5129419.09360110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2263109IPR009057Homeodomain-like
PfamPF002491.1E-1365106IPR001005SANT/Myb domain
CDDcd001673.14E-965106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MQGENLRKGS WLEEEDERLT AFVGLLGERR WDSIARASGL KRSGKSCRLR WLNYLRPDLK  60
RCQISAEEEQ IILQLHKRWG NKWSWIARSL PGRTDNEIKN YWRTHLRKRT EIEEQGILQF  120
SAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-28611025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4565389e-69AM456538.2 Vitis vinifera contig VV78X145138.21, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265893.27e-79PREDICTED: myb-related protein 305
SwissprotQ9SCP16e-53MYB27_ARATH; Transcription factor MYB27
TrEMBLD7TIT37e-83D7TIT3_VITVI; Uncharacterized protein
STRINGVIT_08s0007g04830.t011e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-55myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]