PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033678001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 233aa    MW: 25723.1 Da    PI: 7.8931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033678001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013163185123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++Cg  Fs+   L  H+r+H
  GSVIVT01033678001 163 HECSICGAEFSSGQALGGHMRRH 185
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.76E-892115No hitNo description
PfamPF139121.8E-1092117IPR007087Zinc finger, C2H2
SMARTSM003551.593115IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.74393120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576675.76E-8158185No hitNo description
Gene3DG3DSA:3.30.160.607.6E-4161185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.5E-13162186IPR007087Zinc finger, C2H2
SMARTSM003550.01163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014163193IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEVQEEVMGS NDQTHVIKGK RTKRQRLSSP LALTMASTTT SPTTSTDHEF AESTEEEEDM  60
ANCLILLAQG QSRKVAVPAA AATSSKATGF YVYQCKTCYR CFPSFQALGG HRASHKRPKA  120
VTEEKRTWAL MEDEYDQFNH NSTALSLQIP NRGLYSNNKS KVHECSICGA EFSSGQALGG  180
HMRRHRTFTG PPPTMPMATS SPDGLCSWFH LIHKKVDDTF IPCFCLCCFS LV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.122620.0fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4333530.0AM433353.2 Vitis vinifera contig VV78X066558.22, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267645.11e-126PREDICTED: zinc finger protein ZAT5
SwissprotQ681X41e-46ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A438JS441e-125A0A438JS44_VITVI; Zinc finger protein ZAT5
TrEMBLA5ARW41e-125A5ARW4_VITVI; Uncharacterized protein
STRINGVIT_08s0007g04770.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-43C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]