PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01033744001

Common Name

VIT_08s0007g04200

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

HD-ZIP

Protein Properties

Length: 221aa MW: 25823.2 Da PI: 9.0773

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01033744001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.1e-19	60	113	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle Le+ F+++ ++ +++ +LA++lgL+ rq+ vWFqNrRa++k GSVIVT01033744001 60 KKKRLTNEQLESLERSFQEEIKLEPDRKMKLARELGLQPRQIAVWFQNRRARWK 113 56779************************************************9 PP
2	HD-ZIP_I/II	119.2	2.2e-38	59	150	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl++eq+++LE+sF+ee kLep+rK++lareLglqprq+avWFqnrRAR+ktk+lE+ y++Lk++yd +++e+++L++ev++L+ l+ GSVIVT01033744001 59 EKKKRLTNEQLESLERSFQEEIKLEPDRKMKLARELGLQPRQIAVWFQNRRARWKTKELERLYDVLKQEYDLMSKEKQKLQEEVSKLKGILR 150 69*************************************************************************************97665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-19	48	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.815	55	115	IPR001356	Homeobox domain
SMART	SM00389	1.9E-16	58	119	IPR001356	Homeobox domain
Pfam	PF00046	9.8E-17	60	113	IPR001356	Homeobox domain
CDD	cd00086	1.55E-15	60	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-20	61	122	IPR009057	Homeodomain-like
PRINTS	PR00031	7.1E-6	86	95	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	90	113	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.1E-6	95	111	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MDWNGNLRPF VSRPESSFTF LYNYNYDPYP GMEVKHPVSA ETAHAMVRPM DKSSYGNQEK 60 KKRLTNEQLE SLERSFQEEI KLEPDRKMKL ARELGLQPRQ IAVWFQNRRA RWKTKELERL 120 YDVLKQEYDL MSKEKQKLQE EVSKLKGILR EQATRKQVSM GYTEVSGEET VESTSITIRS 180 SNKPRGLSHQ IADCNYVYTA EEYNPVSPPY WGVLPPYPST *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM470248	0.0	AM470248.2 Vitis vinifera contig VV78X103570.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002283931.2	1e-162	PREDICTED: putative homeobox-leucine zipper protein ATHB-51 isoform X2
Swissprot	Q9LZR0	5e-57	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	D7TIZ2	1e-162	D7TIZ2_VITVI; Uncharacterized protein
STRING	VIT_08s0007g04200.t01	1e-163	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-51	homeobox 51

Link Out ? help Back to Top
Phytozome	GSVIVT01033744001

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]