PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033774001
Common NameVIT_08s0007g03940
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 150aa    MW: 16317.6 Da    PI: 6.2892
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033774001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.1e-06122145123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        ++C+ C++sF++   L++H +  H
  GSVIVT01033774001 122 FSCKSCNRSFNSENALQSHTKAkH 145
                        89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-6116144No hitNo description
PfamPF128746.7E-6122144No hitNo description
PROSITE profilePS5015712.715122149IPR007087Zinc finger, C2H2
SMARTSM003550.0028122145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDDEDESSED EDMVNDRSAS SEDEDDDENE DNEDDKNEIS KKKETPKKAG PSKKRPTESV  60
SKTPVPDKKA KFVTPQKTDG KKSDDKKSGG HVATPYPSKQ AGKTPANTEK PKQQVQKSGG  120
SFSCKSCNRS FNSENALQSH TKAKHTAAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.22830.0bud| cell culture| flower| fruit| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4695588e-79AM469558.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X218406.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654035.11e-99PREDICTED: histone deacetylase HDT1
SwissprotQ6V9I61e-30HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLF6HKH52e-98F6HKH5_VITVI; Uncharacterized protein
STRINGVIT_08s0007g03940.t014e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-22histone deacetylase 2C
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]