PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033781001
Common NameLOC100245950, VIT_08s0007g03900
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 494aa    MW: 54775.5 Da    PI: 4.746
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033781001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.41.9e-321001912102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+++i++d  l+ ++sw  +g+sfvv+d+ ef++ vLp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F +gk++l
  GSVIVT01033781001 100 FLSKTFDIVDDVLLDPIVSWGPTGESFVVWDPVEFSRLVLPRNFKHNNFSSFVRQLNTYGFRKIDSDK---------WEFANEGFMRGKRHL 182
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+ks
  GSVIVT01033781001 183 LKNIRRRKS 191
                        *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-5496189IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-3296189IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.0E-3597189IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-29100189IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-16100123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-16138150IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340139163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-16151163IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MNPRDNPYLD RKESPPPPYQ SEAPAAEAVQ PKTEPFSVGS QPFPSGSPLL QIRPISSLEP  60
PFSGEPIVTV GVAAEAEAEA EEIGAPQPLD CLQDNPIPPF LSKTFDIVDD VLLDPIVSWG  120
PTGESFVVWD PVEFSRLVLP RNFKHNNFSS FVRQLNTYGF RKIDSDKWEF ANEGFMRGKR  180
HLLKNIRRRK SPQSQHTGSY AGPSSEIAMS GLESEVERLR KQKSLLMQEV IELQQQHSGT  240
IHQMEVVNER IQAAEKRQKK MVSFLAKLLQ NPEFLARLLP KDDQKDIGVP RMMRKFVKHQ  300
KLEPGKSDSS MGGQIVKYRP GSENLITSSL FPPSNPDSSH KLIEAPEQVR EETASLGPVG  360
LVFKGKNLVS SQPEGSTNYN LSFIDDSTKE KAFPEFLSPG IDGIIKQADI WSMGFDDSAD  420
MTSSCGELWG NVTNYDVPDL GLTGGISDIW DLGSLQAAEG LGIDKWPSDE STFNEPENQA  480
DQPKDYTSKN TYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-239719417125Heat shock factor protein 1
5d5u_B8e-239718926129Heat shock factor protein 1
5d5v_B8e-239718926129Heat shock factor protein 1
5d5v_D8e-239718926129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4235320.0AM423532.2 Vitis vinifera contig VV78X272044.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654039.10.0PREDICTED: heat stress transcription factor A-2e isoform X1
TrEMBLF6HKH80.0F6HKH8_VITVI; Uncharacterized protein
STRINGVIT_08s0007g03900.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10024911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.14e-97heat shock transcription factor A3