PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01033886001

Common Name

LOC100249478, VIT_08s0007g02940

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 218aa MW: 24445.9 Da PI: 8.098

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01033886001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.9	4.3e-32	4	103	33	127
NAM 33 vikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgekt 119 vi+ vdiy+++PwdLp+ + ++++ew+fF++r++++a+g r+nr t+sgyWkatg+ +v+s+ +++ +g k+t+v+y+grap+g+kt GSVIVT01033886001 4 VIPVVDIYDHNPWDLPQisgDLCHGDHEWFFFIPRQEREARGGRPNRLTTSGYWKATGSPGHVYSSgqNSRIIGGKRTMVYYEGRAPHGRKT 95 7999**********64554445899**********************************8666777**************** PP NAM 120 dWvmheyr 127 +W m+ey+ GSVIVT01033886001 96 EWKMNEYK 103 *****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.42	1	131	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-37	3	131	IPR003441	NAC domain
Pfam	PF02365	1.4E-11	29	103	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MGRVIPVVDI YDHNPWDLPQ ISGDLCHGDH EWFFFIPRQE REARGGRPNR LTTSGYWKAT 60 GSPGHVYSSG QNSRIIGGKR TMVYYEGRAP HGRKTEWKMN EYKAIDGEAA TSNTANPPLR 120 QEFSLCRVYM KTKCLRAFDR RPSGALGREA ASGRARGDEA AATSRHQNPQ MVERTSSPES 180 SSSSGDHANP SQTGESSNWE MSADNPPLWE WEQLNWF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-25	3	131	50	168	NAC domain-containing protein 19
3swm_B	2e-25	3	131	50	168	NAC domain-containing protein 19
3swm_C	2e-25	3	131	50	168	NAC domain-containing protein 19
3swm_D	2e-25	3	131	50	168	NAC domain-containing protein 19
3swp_A	2e-25	3	131	50	168	NAC domain-containing protein 19
3swp_B	2e-25	3	131	50	168	NAC domain-containing protein 19
3swp_C	2e-25	3	131	50	168	NAC domain-containing protein 19
3swp_D	2e-25	3	131	50	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM469974	1e-165	AM469974.2 Vitis vinifera contig VV78X271653.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002276192.1	1e-162	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	6e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A438EK40	1e-161	A0A438EK40_VITVI; NAC domain-containing protein 90
TrEMBL	F6HKN2	1e-161	F6HKN2_VITVI; Uncharacterized protein
STRING	VIT_08s0007g02940.t01	1e-162	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-65	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	GSVIVT01033886001
Entrez Gene	100249478

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]