PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01033902001
Common NameVIT_08s0007g02810
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 240aa    MW: 26947 Da    PI: 8.8454
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01033902001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.65.1e-332104199
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k ltpsdv+k++rlv+pk++ae++    g + e++  l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++d+++
  GSVIVT01033902001   2 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGDSGEKGLLLSFEDECGKCWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVLFQRDRSD 93 
                        99***************************9555668889************************************************99888 PP

                        EE..EEEEE-S CS
                 B3  89 efelvvkvfrk 99 
                          +++++++r+
  GSVIVT01033902001  94 ADRFFIGWRRR 104
                        8889****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100177.33E-30193No hitNo description
Gene3DG3DSA:2.40.330.107.8E-411105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-311105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.6922105IPR003340B3 DNA binding domain
PfamPF023621.0E-292104IPR003340B3 DNA binding domain
SMARTSM010191.2E-252105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MFEKPLTPSD VGKLNRLVIP KQHAEKYFPL GGDSGEKGLL LSFEDECGKC WRFRYSYWNS  60
SQSYVLTKGW SRFVKEKRLD AGDVVLFQRD RSDADRFFIG WRRRAGPAQD NPAAAPPVAV  120
HTNTGNTSVG WTRVFYSAHA YPSHPHAPPL PYQPDCLHAG SVAKNQTTPV GNSKRLRLFG  180
VNLECQMDES EPSTPDGSSL SSQGPVHHQF YPQAYSSNAY NHMDINFSRD VNQMRDHRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-5011047113B3 domain-containing transcription factor NGA1
5os9_B1e-5011047113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.295000.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4486160.0AM448616.2 Vitis vinifera contig VV78X081228.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275955.20.0PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ21e-71Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLF6HKN60.0F6HKN6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g02810.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.16e-73B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]