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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSVIVT01033931001 |
| Common Name | LOC100249486, VIT_08s0007g02510 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family |
E2F/DP |
| Protein Properties |
Length: 467aa MW: 51279.4 Da PI: 4.654 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01033931001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 86.2 | 2.5e-27 | 144 | 209 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg
GSVIVT01033931001 144 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 209
6899******************************...99..****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MSGPRAPTRS APPPPSSGQI LRPMKRHLPF TSTKPPFVPP DDYHRFSSAD AHGVANHEPE 60
GIVVKSPQLK RKSAMDDNEV GSSEWTASPG YADAGNSPFR TPVSGKGGRI YSKSKVSKGN 120
VCGPQTPVSN AGSPSTLTPA GNCRYDSSLG LLTKKFINLI KHAEDGILDL NKAAETLEVQ 180
KRRIYDITNV LEGIGLIEKK LKNRIRWKGL DVSRPGEVDD DVTILQAEVE NLSLEERRLD 240
DHIREMQEKL RDLSEDENNQ KWLFVTEDDI KGLPCFQNET LIAIKAPHGT TLEVPDPDEA 300
VDYPQRRYRI VLRSTMGPID VYLVSQFEEK FEEMNGTPPP LSFPLASSSG SNENPSTEVV 360
IADSSGKELE PQDGYQMCSD LTASQEFIGG IMKIVPDVDS DADYWLRSDA EVSITDMWKT 420
DSYVEWNGVD MLNAEFGMAD VSTPLPQTPP SGLTEGPSTA VNPTHR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM442932 | 1e-135 | AM442932.2 Vitis vinifera contig VV78X220351.11, whole genome shotgun sequence. |
