PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034041001
Common NameLOC100256309, VIT_08s0007g01540
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 411aa    MW: 44221.4 Da    PI: 5.9695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034041001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.8e-174691147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
  GSVIVT01034041001 46 KGPWSPEEDAILSRLVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 91
                       79******************************.***********985 PP
2Myb_DNA-binding56.85.2e-1898142147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r+++T eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  GSVIVT01034041001  98 RKPFTDEEDRIIVAAHAIHGNK-WASIARLLQ-GRTDNAIKNHWNST 142
                        789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.1074192IPR017930Myb domain
SuperFamilySSF466898.63E-3044139IPR009057Homeodomain-like
SMARTSM007173.2E-154594IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-264799IPR009057Homeodomain-like
CDDcd001672.00E-144890No hitNo description
PfamPF139213.1E-1649106No hitNo description
PROSITE profilePS5129427.80493147IPR017930Myb domain
SMARTSM007171.7E-1697145IPR001005SANT/Myb domain
CDDcd001672.29E-12100143No hitNo description
Gene3DG3DSA:1.10.10.602.9E-23100146IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEDITVVEGE GADGGSPGDA MVVGEGEGNG KGSGSSSQAA RGDRVKGPWS PEEDAILSRL  60
VSKFGARNWS LIARGIAGRS GKSCRLRWCN QLDPSVKRKP FTDEEDRIIV AAHAIHGNKW  120
ASIARLLQGR TDNAIKNHWN STLRRRCMEI DRAKLESGNI VEDVSLDKTK ASSEETMSCG  180
DANSSKSLEG KDVNSSDNMA DQNEERAQIE GQFSHEAQDP PTLFRPVARV SAFNVYSSLD  240
GPEHAFPFPR PVPMQGPLIQ ASTPDAGICK LIQGDSGEQL VPQRCGHGCC ESPRGGNLGN  300
SLLGPEFVEF SEPPPFSSFE LAAIATDISN IAWLKSGLEN STVRVMGDAA GRTMSRGSQV  360
QMARFEESRK NDHLRFEEGK NKLMGMMTDV RSTQIGKQSF SVPAKVGGLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-40431464107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.64870.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4706160.0AM470616.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X239782.46, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276375.10.0PREDICTED: myb-like protein B
SwissprotQ425751e-108MYB1_ARATH; Transcription factor MYB1
TrEMBLD7THE00.0D7THE0_VITVI; Uncharacterized protein
STRINGVIT_08s0007g01540.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-101myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]