PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034259001
Common NameVIT_09s0070g00410
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 232aa    MW: 25897.5 Da    PI: 8.8284
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034259001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.22.9e-311367155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       k+r+rWtpeLHe F++av++LGG++kAtPk il+lm+v+gL + hvkSHLQkYRl
  GSVIVT01034259001 13 KQRIRWTPELHELFLDAVSKLGGPDKATPKGILRLMNVEGLNICHVKSHLQKYRL 67
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8671070IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-291168IPR009057Homeodomain-like
SuperFamilySSF466892.15E-181168IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-251368IPR006447Myb domain, plants
PfamPF002493.8E-81766IPR001005SANT/Myb domain
PfamPF143795.3E-18102148IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDNQVPEAAA AQKQRIRWTP ELHELFLDAV SKLGGPDKAT PKGILRLMNV EGLNICHVKS  60
HLQKYRLAKA VQMKQDKKAS SSEERKVATK TDERETPIER AMHVTEALRV QVEVQKTLHE  120
QLKLQKVIQL NLEQNGEYLR RILEDQHKAG VALPSLMGSH SNPQPITLSS SDGASSPKQY  180
DFEVDCFPSL LSKHKASHTT ESEQPRCHKK PRRSSSVEII SIDSPAESVE G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-231369258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-231369258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-241369157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-241369157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-241369157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-241369157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-231369258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-231369258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-231369258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-231369258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-231369258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-231369258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4530460.0AM453046.2 Vitis vinifera contig VV78X159248.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019077684.12e-90PREDICTED: myb family transcription factor PHL6-like
TrEMBLD7U8921e-170D7U892_VITVI; Uncharacterized protein
STRINGVIT_09s0070g00410.t011e-170(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.23e-51G2-like family protein