 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GSVIVT01034266001 |
| Common Name | VIT_09s0070g00470 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
| Family |
C3H |
| Protein Properties |
Length: 395aa MW: 42871.4 Da PI: 6.781 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01034266001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19.9 | 1.3e-06 | 13 | 25 | 14 | 26 |
--TTTTT-SS-SS CS
zf-CCCH 14 tCkyGdrCkFaHg 26
+C+yG+rCkF H+
GSVIVT01034266001 13 ICQYGERCKFLHV 25
7***********7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MIFPPVIRIQ LNICQYGERC KFLHVTQQQP KPNVSGFGAQ TSSNFQHTNV QQQRSNPFGF 60
GVQSNSLPKG TSDFGSKQNH FKPFENKWTR FSPLTTGSSS SSSRQSDNQV QPANHKCTDP 120
ESCKRQIVED FEHERPIWKL TCYGHCKSAP CDIVGDISYE ELRLAAYDDA GRGLSLQSIV 180
ERERSLLNSK LIEFDSLLRK PYAAPPNSTL AIQSPAPNPD ASSLTAQNNT PPSASSFSQL 240
STSPNMGFGT RPSTPSNNAF GQSNSIQFSS QTSGAFGTNN LAFGNAGSFG SQLPVQMHGS 300
PLPSNTAGFS HNNMSAGSKA FSPPAASPQI ISFANNQSPI LSSGTNSMFS AESTMHAQLE 360
KMQRDNFSGD MSIWLKEEWN PGEIPEEEPP DAFV*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AM470055 | 0.0 | AM470055.2 Vitis vinifera contig VV78X213409.9, whole genome shotgun sequence. |
