PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01034540001
Common NameLOC100262305, VIT_18s0072g00470
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 166aa    MW: 18744.6 Da    PI: 10.4679
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01034540001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.43.5e-1483142361
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklks 61 
                        + +++rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN++L k+++e+ k+  ++l  
  GSVIVT01034540001  83 AQQKQRRMIKNRESAARSRERKQAYQVELESSAVRLEEENEQLlKEKAERSKERLKQLME 142
                        6789*************************************9725668888887777755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-1378142No hitNo description
SMARTSM003381.7E-981143IPR004827Basic-leucine zipper domain
PfamPF001702.7E-1283142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.92183135IPR004827Basic-leucine zipper domain
CDDcd147079.81E-1585131No hitNo description
SuperFamilySSF579591.05E-985136No hitNo description
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTLEDFLAKA GAVEEEGEDR DVKVPLVTQR LSGGIFAFDP VPPSPITPAQ VEGSVIGFGN  60
GMEIVGGRGK RRAPVLEPLD KAAQQKQRRM IKNRESAARS RERKQAYQVE LESSAVRLEE  120
ENEQLLKEKA ERSKERLKQL MEKIIPVVER RKPARVLRRV RSMEW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.156891e-176fruit
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4779271e-172AM477927.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X042522.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266826.11e-112PREDICTED: G-box-binding factor 4
SwissprotP427772e-44GBF4_ARATH; G-box-binding factor 4
TrEMBLF6GY421e-111F6GY42_VITVI; Uncharacterized protein
STRINGVIT_18s0072g00470.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8662715
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.19e-42bZIP family protein