PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01034968001

Common Name

LOC100260212, VIT_05s0077g00730

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

WRKY

Protein Properties

Length: 310aa MW: 34408.3 Da PI: 5.928

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01034968001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.4	1.5e-33	154	212	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt+a C vkk+vers++dp++v++tYeg+H+h+ GSVIVT01034968001 154 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTAACGVKKRVERSSDDPTTVVTTYEGQHTHP 212 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	6.5E-102	1	307	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	2.0E-34	139	214	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-29	146	214	IPR003657	WRKY domain
PROSITE profile	PS50811	32.237	149	214	IPR003657	WRKY domain
SMART	SM00774	3.1E-39	154	213	IPR003657	WRKY domain
Pfam	PF03106	4.5E-27	155	212	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEEKEQVKTE NSMANSTFSD QIPASCAFSS SIFDMPCEVE KGSLGFMDLL GIQDYSPSLF 60 DLLQPPLAPH PLTSPASSAP PESSEVVNAP ATPNSSSISS SSTEAANDDQ TKAAEEEEQD 120 QEKNKQQLKP KKKNQKRQRE PRFAFITKSE VDHLDDGYRW RKYGQKAVKN SPFPRSYYRC 180 TTAACGVKKR VERSSDDPTT VVTTYEGQHT HPCPVMPRGS LGIPPEAVTF SAAAASSFAM 240 PQPQYQQQQQ PYFNNSSLSL NFNHMNSSSI NPTFLHERRL RPSPASLLRD HGLLEDLLPS 300 QMFKEPKEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-28	147	214	10	77	Probable WRKY transcription factor 4
2lex_A	1e-28	147	214	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.159	0.0	bud\| cell culture\| fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM461090	0.0	AM461090.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X266006.21, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002279385.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	2e-61	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A438GHD0	0.0	A0A438GHD0_VITVI; WRKY transcription factor
TrEMBL	D7SYJ2	0.0	D7SYJ2_VITVI; WRKY transcription factor
STRING	VIT_05s0077g00730.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-46	WRKY DNA-binding protein 48

Link Out ? help Back to Top
Phytozome	GSVIVT01034968001
Entrez Gene	100260212

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]