PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035027001
Common NameLOC100243111, VIT_05s0077g01240
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family CAMTA
Protein Properties Length: 928aa    MW: 104866 Da    PI: 7.3047
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035027001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.24e-50301463118
               CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        +e k rwl+++ei+aiL n++ +++  ++ + p+sg+++L++r+++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+++npt
  GSVIVT01035027001  30 EEaKGRWLRPNEIHAILCNYTLFTVNVKPVNLPPSGKIVLFDRRMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNDERIHVYYAHGQDNPT 121
                        45599*************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                        f rrcywlL+++le+ivlvhy+e++
  GSVIVT01035027001 122 FVRRCYWLLDKTLEHIVLVHYRETQ 146
                        **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.63225151IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7328146IPR005559CG-1 DNA-binding domain
PfamPF038593.9E-4531144IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.3E-4371471IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.06E-14383469IPR014756Immunoglobulin E-set
PfamPF127963.8E-8562647IPR020683Ankyrin repeat-containing domain
CDDcd002041.03E-17569677No hitNo description
SuperFamilySSF484038.24E-18569684IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.6E-19575682IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.431576681IPR020683Ankyrin repeat-containing domain
SMARTSM002482.6E-5618647IPR002110Ankyrin repeat
PROSITE profilePS5008811.594618650IPR002110Ankyrin repeat
SMARTSM00248240657688IPR002110Ankyrin repeat
SuperFamilySSF525403.98E-6763832IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.254766792IPR000048IQ motif, EF-hand binding site
SMARTSM0001530781803IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.785782811IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0026804826IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.237805829IPR000048IQ motif, EF-hand binding site
PfamPF006126.9E-4806826IPR000048IQ motif, EF-hand binding site
SMARTSM000159.5880902IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206882910IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MESSVPGRLA GWDIHGFRTM EDLDVDSILE EAKGRWLRPN EIHAILCNYT LFTVNVKPVN  60
LPPSGKIVLF DRRMLRNFRK DGHNWKKKND GKTVKEAHEH LKVGNDERIH VYYAHGQDNP  120
TFVRRCYWLL DKTLEHIVLV HYRETQESQG SPVTPVNSSP SPNSATSDPS APWLLSEETD  180
SGTGSTYRAG EKEHQEPRDS ITVRNYEMRI HELNTLEWDE LLVSNDPNNS MAPKEGKISS  240
FEQQNQHVIT SSNSYNRPHS TNDLPVGISP LGNPAESIAG NESAHFNFLD DVYFQKIGGQ  300
VNPNGQRRDS VAVGTGDPVD ILLKDSLEPQ DSFGRWMNYI MTDSPVSVDD PSLGSPVSSS  360
HDSVVSAAGN HQQSSVPDTI FSITDFSPSW AISTEKTKIL VIGFLHENYA DLAKSNLFFV  420
CGDVCVPAEI IQLGVFRCLV PPHAPGLVNF YLSFDGHKPI SQVVTFEYRA PLLYNQTVSS  480
EVETNWEEFQ FQMRLSHLLF STSKGLNIMS SKISPNALRE AKNFVKKTSF IARNWANLTK  540
TIGDNRILVS QAKDLLFEFA LLNKLQEWLV ERIVEGGKTS ERDGQGQGVI HLCAMLGYTR  600
AVYLYSLSGL SLDYRDKFGW TALHWAAYYG RQKMVAVLLS AGAKPNLVTD PTSENPGGCT  660
AADLASKEGH DGLAAYLAEK GLVEQFNDMT LAGNVSGSLQ VSTTEQINSE NLSEEEMNLK  720
DTLAAYRTAA DAAARIQVAF RERSLKLRTK AVENCNPEIE ARNIVAAMRI QHAFRNYETR  780
KRMAAAARIQ HRFRSWKIRK EFLNMRRQAI KIQAVFRGFQ VRRQYRKILW SVGVLEKVIL  840
RWRMKRKGFR GLQVDTVDQL QESDTEEDFF RASRRQAEDR VERSVIRVQA MFRSKKAQEE  900
YRRMKLAHNE AKLEFEGFID PDTNMDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.103860.0bud| flower| fruit| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3817250.0FQ381725.1 Vitis vinifera clone SS0ABG86YO23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272118.20.0PREDICTED: calmodulin-binding transcription activator 6 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLD7SY490.0D7SY49_VITVI; Uncharacterized protein
STRINGVIT_05s0077g01240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP73511116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]