PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035045001
Common NameLOC100249868, VIT_05s0077g01400
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 747aa    MW: 85345.3 Da    PI: 6.6425
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035045001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.23.7e-2096189190
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                        +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w++t +++ HnHe
  GSVIVT01035045001  96 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQIKPSEDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSNIHNHE 187
                        6***************9998874556679*******************9*******************98887676789************* PP

               FAR1  89 la 90 
                        l 
  GSVIVT01035045001 188 LL 189
                        96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1796189IPR004330FAR1 DNA binding domain
PfamPF105511.4E-23312402IPR018289MULE transposase domain
PROSITE profilePS509669.52589624IPR007527Zinc finger, SWIM-type
PfamPF044346.8E-7595622IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-6599626IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MRSTPPPDPP RQFHSCYVDL PLLAVDISSS FTNLIQRMSE GTSLVMESSE NGTDLSQDDI  60
GTVEEIPEDT ILSRQTSVNL VPFLGQRFVS QDAAYEFYCS FAKQCGFSIR RHRTRGKDGV  120
GRGVTRRDFT CHRGGYPQIK PSEDGKLQRN RKSSRCGCQA YMRIVKRADF DVPEWRITGF  180
SNIHNHELLK SNEVRLLPAY CSISPDDKSR ICTFAKAGMS VRQMLRLLEL EKGVKLGCLP  240
FTEIDVRNLL QSFRNVDRDN DAIDLIAMCK KLKDENPNFK YDFRIDGHNR VEHIAWSYAS  300
SVQLYEAFGD AVVFDTTHRL DAYDMLLGVW VGVDNHGITC FFGCVLLRDE NVQSFSWALK  360
TFLGFMKGKA PQTILTDKNM WLKEAIAIEM PATKHAFCIW HIIVKFSDWF SVLLGSQYDD  420
WKAEFHRLYN LELVEDFEQE WREMINKYGL HENKHIASLY ALRTYWALPF LRCYFFAGMM  480
TTFQPESINA LIQRFLSAQS QLDHFIERVA DIVDFNDQAG AKQKMQQKMH KVCLTTGSPI  540
ESHAAAVLTP YAFSKFQEEF VSAPKYASIL LDEGCFHVRH HTQVDGGCKV IWVPRQELIS  600
CSCHQFEFSG ILCRHVLRVL STNNCFHIPD QYLPIRWHGV SSSSTKLSQA TTPREHAERI  660
QLLESMVSTI ITESMETEER LDEACEQIAM VLAHIKELPR PTHNGVDISR KQRHCSLSFC  720
GQFEHDSSDC PIIEGDNLTG DALGFL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4415750.0AM441575.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X044576.17, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271698.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X2
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLD7SY640.0D7SY64_VITVI; Uncharacterized protein
STRINGVIT_05s0077g01400.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]