PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035048001
Common NameLOC100253375, VIT_05s0077g01450
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 154aa    MW: 16668.8 Da    PI: 10.3653
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035048001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-193670135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  GSVIVT01035048001 36 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.6243066IPR000679Zinc finger, GATA-type
SMARTSM004019.6E-133080IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-133270No hitNo description
Gene3DG3DSA:3.30.50.102.3E-153470IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.24E-133587No hitNo description
PROSITE patternPS0034403661IPR000679Zinc finger, GATA-type
PfamPF003204.0E-173670IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVDLSEKGSE SEDMNNKNPD AVSSAESQVN EPKKTCADCG TTKTPLWRGG PAGPKSLCNA  60
CGIRSRKKRR AFLGLNKGST DDRKAKRSSN HSHNNGGGNG NNKLGDSLKR RLFALGREVL  120
LQRSTVEKQR RKLGEEEQAA VLLMALSYGY VYA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.83500.0fruit| inflorescence| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4415751e-166AM441575.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X044576.17, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649545.11e-109PREDICTED: GATA transcription factor 16
SwissprotQ9FJ101e-52GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A438IQP21e-108A0A438IQP2_VITVI; GATA transcription factor 16
TrEMBLD7SY671e-108D7SY67_VITVI; Uncharacterized protein
STRINGVIT_05s0077g01450.t011e-109(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-50GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]