PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035332001
Common NameLOC100266257, VIT_04s0008g00620
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 260aa    MW: 28414.8 Da    PI: 8.2106
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035332001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.6e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEd  l ++v+ +G g +W + +r+ g++R++k+c++rw++yl
  GSVIVT01035332001 14 RGPWSPEEDATLRNYVQTHGIGgNWIALPRKAGLRRCGKSCRLRWLNYL 62
                       89******************999************************97 PP
2Myb_DNA-binding44.24.3e-1469111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +T+eEd+ +    +q+G++ W+ Ia+ ++ gRt++++k++w++
  GSVIVT01035332001  69 GGFTEEEDKVICAIYNQMGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.461962IPR017930Myb domain
SuperFamilySSF466896.25E-2811109IPR009057Homeodomain-like
SMARTSM007171.2E-101364IPR001005SANT/Myb domain
PfamPF002496.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-251569IPR009057Homeodomain-like
CDDcd001671.01E-81662No hitNo description
PROSITE profilePS5129420.49663117IPR017930Myb domain
SMARTSM007171.3E-1267115IPR001005SANT/Myb domain
PfamPF002494.2E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2470117IPR009057Homeodomain-like
CDDcd001674.01E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLRNYVQ THGIGGNWIA LPRKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDKVIC AIYNQMGSRW SVIASQLPGR TDNDVKNYWN TKLKKKLAKF  120
HSNGNAANNP NPFSSAPPPT AAPMPVTEAY RHGFPPLLTQ GYTGTSNNMG VSEFGASSNN  180
GHNVFISDQG GLSTDHATGI SYVSYLPGTR GGEDDGVLMD FGMGNLPYDI ISGFWFQEKD  240
STEVTPGHDQ SRFLLIDGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4680460.0AM468046.2 Vitis vinifera contig VV78X022861.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278546.10.0PREDICTED: transcription factor RAX1
TrEMBLF6H3820.0F6H382_VITVI; Uncharacterized protein
STRINGVIT_04s0008g00620.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.13e-71myb domain protein 68