PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035385001
Common NameLOC100245740, VIT_04s0008g01110
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 300aa    MW: 34338.5 Da    PI: 6.1884
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035385001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind84.71.3e-26208924102
                        SSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind  24 ngnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                          nsf+v+d+++f++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+ll++ikr+++
  GSVIVT01035385001  20 ARNSFIVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLKNIKRRRH 89 
                        469****************************************999.........*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.0E-33987IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.0E-232087IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-262087IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-232187IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.6E-103648IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403761IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-104961IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGSSSSSSSS PGFAPHPLEA RNSFIVWDSH KFSTTLLPRY FKHSNFSSFI RQLNTYGFRK  60
VDPDRWEFAN EGFLGGQKHL LKNIKRRRHV SQNTQQGGLG ACVELGQYGL EDELERLKRD  120
RNVLMAEIGK LRQQQQNSRN ELVAMEGRMQ NTEKKQMQMM TFLAKALNNP SFVQQFIQQR  180
RELRGAEIGR KRRLTTSQSA ENLQEVITDP KADSIDNNLG SVNDVIWEEL LSDDLIAGNE  240
EEVPPLRLGD HHEPETDVEV EDLVATPSDW GEDFQDLVDQ MAFLRPNLRS RLERRVLNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-15228744120Heat shock factor protein 1
5d5u_B4e-15228753129Heat shock factor protein 1
5d5v_B4e-15228753129Heat shock factor protein 1
5d5v_D4e-15228753129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086LKNIKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.97320.0bud| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8017380.0JQ801738.1 Vitis vinifera cultivar Cabernet Sauvignon heat shock transcription factor A2 (HsfA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278709.10.0PREDICTED: heat shock factor protein HSF30 isoform X2
SwissprotP411521e-109HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLF6H3M70.0F6H3M7_VITVI; Uncharacterized protein
STRINGVIT_04s0008g01110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-101heat shock transcription factor A2
Publications ? help Back to Top
  1. Pillet J, et al.
    VvGOLS1 and VvHsfA2 are involved in the heat stress responses in grapevine berries.
    Plant Cell Physiol., 2012. 53(10): p. 1776-92
    [PMID:22952249]
  2. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]