PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01035426001

Common Name

LOC100266400, VIT_04s0008g01470

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

WRKY

Protein Properties

Length: 167aa MW: 18916.7 Da PI: 4.9949

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01035426001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.3	1.1e-31	103	161	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ gC+vkk+ver++edpk+v++tYeg Hnhe GSVIVT01035426001 103 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCNVKKRVERDREDPKYVITTYEGIHNHE 161 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-34	89	163	IPR003657	WRKY domain
SuperFamily	SSF118290	9.02E-29	95	163	IPR003657	WRKY domain
PROSITE profile	PS50811	32.041	98	163	IPR003657	WRKY domain
SMART	SM00774	1.1E-36	103	162	IPR003657	WRKY domain
Pfam	PF03106	1.8E-24	104	161	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MADTTAGSQD SPEAESDFEL GDTSNFELSE YLLFDDLMEE DHSAFLASEF AQNPIHPGNE 60 VDKPGSSSSQ HERPASRNSE SGQKKKEAKE RVAFITKSEI EILDDGFKWR KYGKKMVKNS 120 PNPRNYYRCS VDGCNVKKRV ERDREDPKYV ITTYEGIHNH ESPSKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-28	96	164	10	78	Probable WRKY transcription factor 4
2lex_A	4e-28	96	164	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.7775	0.0	fruit\| inflorescence\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM431949	1e-125	AM431949.2 Vitis vinifera contig VV78X111726.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002279407.1	1e-122	PREDICTED: probable WRKY transcription factor 50
Swissprot	Q8VWQ5	1e-42	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	D7STT5	1e-121	D7STT5_VITVI; Uncharacterized protein
STRING	VIT_04s0008g01470.t01	1e-121	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	4e-45	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	GSVIVT01035426001
Entrez Gene	100266400

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]