PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035852001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 176aa    MW: 19558.4 Da    PI: 10.6108
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035852001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.5e-18656155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                       ++++GVr++  +g+Wv+eIr+p        +r++lg+f +ae Aa+a+++a+  ++g
  GSVIVT01035852001  6 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFESAEAAARAYDQAAILMNG 56
                       59*****999.**********8.....334**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.08E-22666No hitNo description
SuperFamilySSF541718.5E-20765IPR016177DNA-binding domain
PROSITE profilePS5103221.825764IPR001471AP2/ERF domain
PfamPF008474.8E-11756IPR001471AP2/ERF domain
SMARTSM003802.2E-37770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-31764IPR001471AP2/ERF domain
PRINTSPR003679.8E-10819IPR001471AP2/ERF domain
PRINTSPR003679.8E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVSATKKFRG VRQRQWGSWV SEIRHPLLKR RVWLGTFESA EAAARAYDQA AILMNGQNAK  60
TNFPVALSEI LTTKLRKCCK DPSPSLTCLR LDTDNSHLGV WQKRAGTRSG SSWVMRVELG  120
KKDGQVSDEN SSSFLRSPRG GAEAGDGCSF MTEINLNPRH MVSLIMWLVL KNYGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-16665161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-16665464ATERF1
3gcc_A6e-16665464ATERF1
5wx9_A8e-167641472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.108121e-137leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4748691e-132AM474869.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X123303.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285107.13e-90PREDICTED: ethylene-responsive transcription factor SHINE 2
SwissprotQ3E9584e-61SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLF6H3246e-89F6H324_VITVI; Uncharacterized protein
STRINGVIT_04s0008g05440.t011e-89(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.15e-56ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]