PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035905001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 253aa    MW: 27730.2 Da    PI: 8.5995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035905001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00027395123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C + F ++  L  H++ H
  GSVIVT01035905001 73 FSCNYCQRKFYSSQALGGHQNAH 95
                       89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-670100No hitNo description
PROSITE profilePS5015711.42773100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MPEDKKIKLR EVNENSCPQL TKVDLLFNLE LHSKDAADHG FNTELNLIDC LNTDSSQTSS  60
EIPQPADAEP RVFSCNYCQR KFYSSQALGG HQNAHKRERT LAKRGQRLGA PMVAAATAFG  120
HPYFHHQHYS SMASLPLHGA YNRSLGIQVH SMIHKPSLTT PSSGSGNLYG HRSWSRPPID  180
QQPAVGRLAV ENCHEGVTAG PLSRGGIGRF DTVRMMINSQ ANEGIGGFCW TGGGRLKTNQ  240
DELQKLDLSL KL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4630050.0AM463005.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X190100.14, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282938.11e-175PREDICTED: zinc finger protein 3-like
TrEMBLA0A438KF961e-173A0A438KF96_VITVI; Zinc finger protein 3
TrEMBLF6H3J51e-173F6H3J5_VITVI; Uncharacterized protein
STRINGVIT_04s0008g05930.t011e-174(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-54C2H2 family protein