PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035921001
Common NameLOC100254363, VIT_04s0008g06130
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 220aa    MW: 25042.1 Da    PI: 5.6773
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035921001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.7e-081561892154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp++e++++L +++gL+ +q+ +WF N+R +
  GSVIVT01035921001 156 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 189
                        469*****************************87 PP
2ELK301.2e-10110131122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELKh+L+++Y+++++++++E++
  GSVIVT01035921001 110 ELKHELKQGYKEKIVDIREEIL 131
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.9E-25253IPR005541KNOX2
PfamPF037911.1E-20252IPR005541KNOX2
PROSITE profilePS512139.969110130IPR005539ELK domain
PfamPF037894.3E-7110131IPR005539ELK domain
SMARTSM011886.1E-4110131IPR005539ELK domain
PROSITE profilePS5007111.742130193IPR001356Homeobox domain
SuperFamilySSF466891.88E-16132196IPR009057Homeodomain-like
SMARTSM003893.7E-11132197IPR001356Homeobox domain
CDDcd000865.67E-12133194No hitNo description
Gene3DG3DSA:1.10.10.601.1E-25137194IPR009057Homeodomain-like
PfamPF059203.7E-18150189IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MLGDEKELDQ FMTHYVLLLC SFKEQLQQHV RVHAMEAVMA CWEIEQSLQS LTGVSPGEGT  60
GATMSDDEED QIDSDANLFD GSLEGADSMG FGPLVPTESE RSLMERVRQE LKHELKQGYK  120
EKIVDIREEI LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKAKLVQ ETGLQLKQIN  180
NWFINQRKRN WHSNPSTSTV LKSKRKSNAG ENSSGDRFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13133197872Homeobox protein PKNOX1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.11370.0bud| cell culture| flower| fruit| inflorescence| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3888760.0FJ388876.1 Juglans nigra KNAT3-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648713.11e-162PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-145KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLF6H3V21e-161F6H3V2_VITVI; Uncharacterized protein
STRINGVIT_04s0008g06130.t011e-162(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-147KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]