PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035959001
Common NameVIT_04s0008g06550
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 165aa    MW: 18677.4 Da    PI: 8.1931
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035959001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.88e-143581148
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                       lppG+rF+Ptd e++v+yL+kkv++++l+  + i ev++y ++P++L 
  GSVIVT01035959001 35 LPPGYRFNPTDAEIIVFYLRKKVDHQPLPP-NKIIEVNLYAYDPEELA 81
                       79*************************999.6799************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-172984IPR003441NAC domain
PROSITE profilePS5100511.56635164IPR003441NAC domain
PfamPF023655.9E-73678IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MNLLELGEDA SLQTAPQEVQ NNRSEYGKHF DLNSLPPGYR FNPTDAEIIV FYLRKKVDHQ  60
PLPPNKIIEV NLYAYDPEEL AGFFRLGMVN GSISRQGTRN IGMGNVPIGQ SEVDTGRPPE  120
LIKRSNLRIE RRTGVNDMRV RIYQVPFSFS LYCILRCFLF VAVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4285981e-138AM428598.1 Vitis vinifera contig VV78X100938.1, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648824.11e-50PREDICTED: NAC domain-containing protein 2-like isoform X1
TrEMBLD7SV361e-117D7SV36_VITVI; Uncharacterized protein
STRINGVIT_04s0008g06550.t011e-117(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.17e-14NAC domain containing protein 25