PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01035965001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 531aa    MW: 58566.9 Da    PI: 8.6858
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01035965001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.88.3e-27135192259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +DgynWrKYGqK+vk++e +rsYYrCt+++C +kkkv+++++ + v+ ++Y+g Hnh+
  GSVIVT01035965001 135 NDGYNWRKYGQKQVKSTESSRSYYRCTYSDCDAKKKVQQCHQSGFVTGVIYKGFHNHD 192
                        7********************************************************7 PP
2WRKY102.32.8e-32349406259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK+vkg+++prsYYrCtsagCpv+k+ver+++d++++++tYeg+H+h+
  GSVIVT01035965001 349 SDGYRWRKYGQKMVKGNPHPRSYYRCTSAGCPVRKHVERDTDDKTTIIVTYEGKHDHD 406
                        7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-25123194IPR003657WRKY domain
PROSITE profilePS5081121.448129194IPR003657WRKY domain
SuperFamilySSF1182902.88E-24130194IPR003657WRKY domain
SMARTSM007749.2E-28134193IPR003657WRKY domain
PfamPF031061.4E-21135192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-34333408IPR003657WRKY domain
PROSITE profilePS5081134.544343408IPR003657WRKY domain
SuperFamilySSF1182904.05E-28344408IPR003657WRKY domain
SMARTSM007741.9E-36348407IPR003657WRKY domain
PfamPF031063.2E-26350405IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MADHRSQTLA PVPHPSHYDH DCPSFSDLFN GVTHSEFPTI QNGQFGMSHQ EVLASVTAKA  60
AQAPVQMDQP VCMHSSTESS SVPKSEISMP NSTPGVENPL ALPQDNASIK QRADQKDFSD  120
HKTQLADTVV MNIPNDGYNW RKYGQKQVKS TESSRSYYRC TYSDCDAKKK VQQCHQSGFV  180
TGVIYKGFHN HDPPPKIRCT QLRKSAAVSP VEGSDTVYPT AQKLGNSDLS NYKSEPGKAS  240
VAMPELERQN SSNSDSNTGI KAEEEIGDVV ERKRRMKPQE PLVLPSRRKQ RSSCSSNEIV  300
KKEVGECGDE QKPKQRMKEG GLACSAPLFK TIKEPKIVVH AAGDVGISSD GYRWRKYGQK  360
MVKGNPHPRS YYRCTSAGCP VRKHVERDTD DKTTIIVTYE GKHDHDRPVP KKRHSPRTAA  420
FLIAAAAAMN NNQCKKTETL ANQRSSNQQS ADMEHDLTCQ KALELGGEKA LESARTLLSI  480
GIEIKPYILL NSGFVIRHLC FSLASGSIRL SSPRASEMEK EASCCVMDPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-28130408275WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.127220.0fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4281960.0AM428196.2 Vitis vinifera contig VV78X040591.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648749.10.0PREDICTED: probable WRKY transcription factor 32
TrEMBLF6H3360.0F6H336_VITVI; Uncharacterized protein
STRINGVIT_04s0008g06600.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.14e-80WRKY DNA-binding protein 32