PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036071001
Common NameLOC100265540, VIT_06s0080g00970
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 376aa    MW: 42903.5 Da    PI: 6.3296
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036071001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.8e-50171431128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        + pGfrF+Ptdeel+++yLkkk++g++ ++ evi+ev+i+k+ePwdLp k++ ++e+ew+fFs+r +ky++g++++rat+ gyWkatgk++ 
  GSVIVT01036071001  17 MFPGFRFSPTDEELISHYLKKKIQGSEKSV-EVIAEVEICKYEPWDLPaKSIIESENEWFFFSPRGRKYPNGSQSKRATEYGYWKATGKERI 107
                        579************************999.99***************667777899********************************999 PP

                NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v+s +++l+g k+tLvf+ grapkge+t+W+mhey +
  GSVIVT01036071001 108 VKS-GSTLIGSKRTLVFHIGRAPKGERTEWIMHEYCM 143
                        998.99*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-568158IPR003441NAC domain
PROSITE profilePS5100553.84117159IPR003441NAC domain
PfamPF023651.2E-2519142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSEVPRETQL SIAASSMFPG FRFSPTDEEL ISHYLKKKIQ GSEKSVEVIA EVEICKYEPW  60
DLPAKSIIES ENEWFFFSPR GRKYPNGSQS KRATEYGYWK ATGKERIVKS GSTLIGSKRT  120
LVFHIGRAPK GERTEWIMHE YCMEGKSQDS LVVCRLRKNT EFRMNGSQRR LSTMTGHNHA  180
ISEVNIDQTN LSEREQGIES SSNKCSSSYD SYSIGQVDST SESDQKPSNE FTQPESSHQQ  240
DCDRADDCFA EIMNDDIIKL DETFLADNPQ LLFMIADKTE LERESEPPEP VDTTQVLPFQ  300
GTANRRIRLK KQGPRRISYP AEYMSIEPPK YLMKTLVNRL IYLLVIILTL LVLFSSLGGS  360
GWVKKVIHTT MYHDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-46815813164NO APICAL MERISTEM PROTEIN
1ut4_B3e-46815813164NO APICAL MERISTEM PROTEIN
1ut7_A3e-46815813164NO APICAL MERISTEM PROTEIN
1ut7_B3e-46815813164NO APICAL MERISTEM PROTEIN
3swm_A3e-46815816167NAC domain-containing protein 19
3swm_B3e-46815816167NAC domain-containing protein 19
3swm_C3e-46815816167NAC domain-containing protein 19
3swm_D3e-46815816167NAC domain-containing protein 19
3swp_A3e-46815816167NAC domain-containing protein 19
3swp_B3e-46815816167NAC domain-containing protein 19
3swp_C3e-46815816167NAC domain-containing protein 19
3swp_D3e-46815816167NAC domain-containing protein 19
4dul_A3e-46815813164NAC domain-containing protein 19
4dul_B3e-46815813164NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in imbibed seeds (PubMed:19704545). Detected in early stages of seed development, especially in the basal tip of immature embryo. Particularly expressed in vascular tissues of inflorescence stems, roots, leaves and petioles (PubMed:17410378). {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:19704545}.
UniprotTISSUE SPECIFICITY: Expressed in seeds, leaves, roots and inflorescence (PubMed:17410378). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4747190.0AM474719.2 Vitis vinifera contig VV78X088138.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272914.20.0PREDICTED: NAC domain-containing protein 40 isoform X1
SwissprotQ9XIN72e-93NAC40_ARATH; NAC domain-containing protein 40
TrEMBLF6HHD10.0F6HHD1_VITVI; Uncharacterized protein
STRINGVIT_06s0080g00970.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10249610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.15e-95NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]