PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036090001
Common NameLOC100263868, VIT_06s0080g00790
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 226aa    MW: 25624.6 Da    PI: 8.4513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036090001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-071560346
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                       +W+   d+l+ +a    + +   +W++Ia+ ++ g++  +++ ++ +
  GSVIVT01036090001 15 SWSRHQDKLFERALVVIPEEtpdRWDKIAAQVP-GKSSSEVRRHYED 60
                       7*****************99*************.***********76 PP
2Myb_DNA-binding431e-13114158347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++ + +++G+g+W++I+r     Rt+ q+ s+ qky
  GSVIVT01036090001 114 PWTEEEHRLFLIGLQRYGKGDWRSISRNAVVSRTPTQVASHAQKY 158
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.45E-11963IPR009057Homeodomain-like
SMARTSM007172.4E-71264IPR001005SANT/Myb domain
PROSITE profilePS500906.7371462IPR017877Myb-like domain
PfamPF002497.4E-61561IPR001005SANT/Myb domain
CDDcd001670.001552162No hitNo description
PROSITE profilePS5129419.255107163IPR017930Myb domain
SuperFamilySSF466898.22E-17109163IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17110161IPR006447Myb domain, plants
SMARTSM007176.5E-10111161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-12111158IPR009057Homeodomain-like
PfamPF002492.5E-11114158IPR001005SANT/Myb domain
CDDcd001678.70E-9114159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMMVNQSPSP SSSSSWSRHQ DKLFERALVV IPEETPDRWD KIAAQVPGKS SSEVRRHYED  60
LVHDVAEIDS GRVELPLYED ESCGSPWASD SRAGQVSFSP RPRQSESERK KGVPWTEEEH  120
RLFLIGLQRY GKGDWRSISR NAVVSRTPTQ VASHAQKYFM RLTSGKKDKK RSSIHDITTV  180
DTSNSLPHSN TQTWVGESLA SQIPYYEEGP PSFGFSILKW NMWKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-151178673RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.237270.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4313290.0AM431329.2 Vitis vinifera contig VV78X228264.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273261.11e-158PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN64e-61SRM1_ARATH; Transcription factor SRM1
TrEMBLF6HHE11e-157F6HHE1_VITVI; Uncharacterized protein
STRINGVIT_06s0080g00790.t011e-157(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-70MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]