PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01036091001

Common Name

LOC100263879, VIT_06s0080g00780

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 233aa MW: 26616.9 Da PI: 7.6584

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01036091001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.3	1.1e-47	4	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Pt+eelv++yL+ k++gk+ e+++vi+++diy++eP++Lpk +ka++++w+fF++r++++a+g r++r+t+sgyWkatg GSVIVT01036091001 4 LPPGFRFYPTEEELVSFYLRMKLRGKRlQEISRVIPDIDIYELEPSHLPKhageVCKADTEQWFFFTPRQEREARGGRPSRTTESGYWKATG 95 79***********************5455677***********656765566788*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + v+s++++++g+kkt+vfykg+ap g+kt+W mheyr+ GSVIVT01036091001 96 SPSYVYSSDNRVIGVKKTMVFYKGKAPAGRKTKWKMHEYRA 136 *************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-49	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	49.268	4	165	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEDLPPGFRF YPTEEELVSF YLRMKLRGKR LQEISRVIPD IDIYELEPSH LPKHAGEVCK 60 ADTEQWFFFT PRQEREARGG RPSRTTESGY WKATGSPSYV YSSDNRVIGV KKTMVFYKGK 120 APAGRKTKWK MHEYRAIETD TTTLNSTTAI PKLRHEFTLS RVYVVSGSFR AFDRRPLGTV 180 VREETSQQDT QIMEKTSSSP ESSCSGGDHL HLQASPAPID DFPWDWDPLD GL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-35	4	163	20	166	NAC domain-containing protein 19
3swm_B	1e-35	4	163	20	166	NAC domain-containing protein 19
3swm_C	1e-35	4	163	20	166	NAC domain-containing protein 19
3swm_D	1e-35	4	163	20	166	NAC domain-containing protein 19
3swp_A	1e-35	4	163	20	166	NAC domain-containing protein 19
3swp_B	1e-35	4	163	20	166	NAC domain-containing protein 19
3swp_C	1e-35	4	163	20	166	NAC domain-containing protein 19
3swp_D	1e-35	4	163	20	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM443089	1e-164	AM443089.2 Vitis vinifera contig VV78X230441.2, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274253.1	1e-146	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	4e-91	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A438HQB1	1e-145	A0A438HQB1_VITVI; NAC domain-containing protein 90
TrEMBL	F6HHE2	1e-145	F6HHE2_VITVI; Uncharacterized protein
STRING	VIT_06s0080g00780.t01	1e-146	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	8e-90	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	GSVIVT01036091001
Entrez Gene	100263879

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]