PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036120001
Common NameLOC100262207, VIT_06s0080g00460
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YB
Protein Properties Length: 194aa    MW: 21470.8 Da    PI: 5.514
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036120001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB43.86e-1411104795
              NF-YB   7 flPianvsrimkkvlPa...nak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        +lP + v r++k  l +   ++   i kd      e +  fi ++++ a+d c++ +r+tin+dd+l a+ ++ f ++v+plk+ l ++r+ 
  GSVIVT01036120001  11 ELPKTIVRRVVKDKLSQfsdDGDiiIHKDGLRAFCESARIFIHYLSATANDLCKESRRQTINADDVLKAIEEIEFPEFVQPLKASLDEFRKK 102
                        678888888888887652222322278899999999999***************************************************87 PP

              NF-YB  94 eg 95 
                        ++
  GSVIVT01036120001 103 NA 104
                        65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-3010142IPR009072Histone-fold
PfamPF008083.9E-81180IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471139.66E-2512141IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEKVAVAEVE ELPKTIVRRV VKDKLSQFSD DGDIIIHKDG LRAFCESARI FIHYLSATAN  60
DLCKESRRQT INADDVLKAI EEIEFPEFVQ PLKASLDEFR KKNAGKKAGA AKSKEAKKRK  120
EDSSLNNEGD KGKNDGGDEG NEVEDDSHEP KQKSAGKKSG AGKSKKVNKK RKVEEVKQDD  180
EGNEDEDDSH ANE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199119RKKNAGKKAGAAKSKEAKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.132443e-97bud| cell culture| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4415123e-91AM441512.2 Vitis vinifera contig VV78X024731.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275482.11e-135PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLD7TCU31e-134D7TCU3_VITVI; Uncharacterized protein
STRINGVIT_06s0080g00460.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.15e-39nuclear factor Y, subunit B11