PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01036202001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 100aa    MW: 11524.2 Da    PI: 8.2012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01036202001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000466482321
                       HHHHHHHHHHHHHHHHHHH CS
                HLH  3 rahnerErrRRdriNsafe 21
                       +++  rE+ RR+++N+++ 
  GSVIVT01036202001 64 ESKACREKMRREKMNDRLK 82
                       67889***********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MDSFEDGGWD LLDYCIIEDA TSADYFWANQ SPSREINALV VDTVSTEKRC KRGREKGERC  60
SRAESKACRE KMRREKMNDR LKSRPNCLML FLRIVGILL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.83013e-80fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4488712e-38AM448871.2 Vitis vinifera contig VV78X150295.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268590.24e-53PREDICTED: transcription factor bHLH104
TrEMBLF6HVH69e-52F6HVH6_VITVI; Uncharacterized protein
STRINGVIT_14s0081g00720.t011e-52(Vitis vinifera)