PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01036223001

Common Name

VIT_14s0081g00560

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

WRKY

Protein Properties

Length: 305aa MW: 34286.2 Da PI: 10.0892

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01036223001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.2	6.3e-32	237	294	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ GSVIVT01036223001 237 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHS 294 9**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.2E-18	188	233	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.0E-34	223	294	IPR003657	WRKY domain
PROSITE profile	PS50811	30.079	230	296	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-27	233	294	IPR003657	WRKY domain
SMART	SM00774	4.0E-39	235	295	IPR003657	WRKY domain
Pfam	PF03106	1.3E-27	237	293	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEGVEEANKS AVESCHRVLS FLCQPQDQVQ YRNLMMETEE AVFKFKRVVS LLNNGFGHER 60 VRKFRRLRSS LPQSIFLETP NYKPNPSPKP LQLLPTNFLE NPLPEIDSKA KIKPPLQIMK 120 YQADMMYSRS NSGINLKFDG SSCTPTMSST RSFISSLSMD GSVANLDGNS FHLIGVPQLS 180 DPNSHQPRRR CSGRGEDGSV KCGSSGKCHC SKRRKLRVKR SIKVPAISNK VADIPPDEYS 240 WRKYGQKPIK GSPHPRGYYK CSSMRGCPAR KHVERCLEDP SMLIVTYEGE HNHSRLLSSQ 300 SAHT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	223	293	2	71	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.10171	0.0	cell culture\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM438632	1e-180	AM438632.1 Vitis vinifera contig VV78X112776.3, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002270614.2	0.0	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q93WU6	1e-120	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	F6HVI7	0.0	F6HVI7_VITVI; Uncharacterized protein
STRING	VIT_14s0081g00560.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1817	15	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	1e-123	WRKY DNA-binding protein 74

Link Out ? help Back to Top
Phytozome	GSVIVT01036223001

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]